J4_1VY6_027
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 1VY6|1|DA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VY6_027 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.127
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
1VY6|1|DA|C|2285
1VY6|1|DA|A|2286
1VY6|1|DA|A|2287
1VY6|1|DA|A|2288
1VY6|1|DA|G|2289
*
1VY6|1|DA|C|2343
1VY6|1|DA|U|2344
1VY6|1|DA|G|2345
1VY6|1|DA|A|2346
1VY6|1|DA|C|2347
*
1VY6|1|DA|G|2370
1VY6|1|DA|G|2371
1VY6|1|DA|G|2372
*
1VY6|1|DA|C|2381
1VY6|1|DA|G|2382
1VY6|1|DA|G|2383
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D0
- 50S ribosomal protein L27
- Chain D6
- 50S ribosomal protein L33
- Chain D8
- 50S ribosomal protein L35
- Chain DS
- 50S ribosomal protein L18
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