J4_1VY7_017
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 1VY7|1|CA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VY7_017 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.069
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
1VY7|1|CA|G|575
1VY7|1|CA|G|576
1VY7|1|CA|G|577
*
1VY7|1|CA|C|764
1VY7|1|CA|G|765
1VY7|1|CA|A|766
1VY7|1|CA|A|767
1VY7|1|CA|A|768
1VY7|1|CA|G|769
*
1VY7|1|CA|C|810
1VY7|1|CA|C|811
1VY7|1|CA|C|812
1VY7|1|CA|U|813
1VY7|1|CA|A|814
1VY7|1|CA|A|815
1VY7|1|CA|A|816
1VY7|1|CA|C|817
1VY7|1|CA|G|818
1VY7|1|CA|A|819
1VY7|1|CA|U|820
1VY7|1|CA|G|821
*
1VY7|1|CA|C|879
1VY7|1|CA|C|880
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CH
- 30S ribosomal protein S8
- Chain CL
- 30S ribosomal protein S12
- Chain CO
- 30S ribosomal protein S15
- Chain CQ
- 30S ribosomal protein S17
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: