J4_1XMO_003

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1XMO_003 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0647

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1XMO|1|A|G|142
1XMO|1|A|A|143
1XMO|1|A|G|144
*
1XMO|1|A|C|178
1XMO|1|A|A|179
1XMO|1|A|U|180
1XMO|1|A|G|181
1XMO|1|A|U|182
1XMO|1|A|G|183
*
1XMO|1|A|C|194
1XMO|1|A|A|195
1XMO|1|A|A|196
1XMO|1|A|A|197
1XMO|1|A|G|198
*
1XMO|1|A|C|219
1XMO|1|A|G|220
1XMO|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20