J4_1XMQ_002

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1XMQ_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.055

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1XMQ|1|A|G|142
1XMQ|1|A|A|143
1XMQ|1|A|G|144
*
1XMQ|1|A|C|178
1XMQ|1|A|A|179
1XMQ|1|A|U|180
1XMQ|1|A|G|181
1XMQ|1|A|U|182
1XMQ|1|A|G|183
*
1XMQ|1|A|C|194
1XMQ|1|A|A|195
1XMQ|1|A|A|196
1XMQ|1|A|A|197
1XMQ|1|A|G|198
*
1XMQ|1|A|C|219
1XMQ|1|A|G|220
1XMQ|1|A|C|221

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain T

30S Ribosomal Protein S20