J4_1XNQ_002

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1XNQ_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.057

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

1XNQ|1|A|G|142
1XNQ|1|A|A|143
1XNQ|1|A|G|144
*
1XNQ|1|A|C|178
1XNQ|1|A|A|179
1XNQ|1|A|U|180
1XNQ|1|A|G|181
1XNQ|1|A|U|182
1XNQ|1|A|G|183
*
1XNQ|1|A|C|194
1XNQ|1|A|A|195
1XNQ|1|A|A|196
1XNQ|1|A|A|197
1XNQ|1|A|G|198
*
1XNQ|1|A|C|219
1XNQ|1|A|G|220
1XNQ|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Ribosomal protein S20