J4_1Y69_007

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

1Y69|1|0|A|2265, 1Y69|1|0|A|2267, 1Y69|1|0|U|2323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Y69_007 not in the Motif Atlas

Homologous match to J4_7A0S_009

Geometric discrepancy: 0.3531

The information below is about J4_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

1Y69|1|0|C|2264
1Y69|1|0|A|2265
1Y69|1|0|A|2266
1Y69|1|0|A|2267
1Y69|1|0|G|2268
*
1Y69|1|0|U|2322
1Y69|1|0|U|2323
1Y69|1|0|G|2324
1Y69|1|0|A|2325
1Y69|1|0|C|2326
*
1Y69|1|0|G|2349
1Y69|1|0|G|2350
1Y69|1|0|G|2351
*
1Y69|1|0|C|2360
1Y69|1|0|G|2361
1Y69|1|0|G|2362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L27