J4_1YHQ_007

3D structure

PDB id

1YHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YHQ_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.021

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

1YHQ|1|0|G|1828
1YHQ|1|0|A|1829
1YHQ|1|0|C|1830
1YHQ|1|0|U|1831
1YHQ|1|0|G|1832
*
1YHQ|1|0|C|1844
1YHQ|1|0|A|1845
1YHQ|1|0|U|1846
1YHQ|1|0|A|1847
1YHQ|1|0|G|1848
*
1YHQ|1|0|U|1883
1YHQ|1|0|G|1884
1YHQ|1|0|A|1885
1YHQ|1|0|A|1886
1YHQ|1|0|U|1887
*
1YHQ|1|0|A|2015
1YHQ|1|0|U|2016
1YHQ|1|0|U|2017
1YHQ|1|0|A|2018
1YHQ|1|0|A|2019
1YHQ|1|0|C|2020

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae