J4_1YI2_001

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1YI2|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YI2_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0285

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1YI2|1|0|C|239
1YI2|1|0|C|240
*
1YI2|1|0|G|379
1YI2|1|0|A|380
1YI2|1|0|G|381
1YI2|1|0|U|382
1YI2|1|0|A|383
1YI2|1|0|G|384
*
1YI2|1|0|C|405
1YI2|1|0|G|406
1YI2|1|0|A|407
1YI2|1|0|A|408
1YI2|1|0|U|409
1YI2|1|0|A|410
1YI2|1|0|A|411
1YI2|1|0|C|412
*
1YI2|1|0|G|428
1YI2|1|0|A|429
1YI2|1|0|A|430
1YI2|1|0|G|431

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain M

50S Ribosomal Protein L15E