J4_1YJ9_003

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGCGAUAG*CG*CUGUC*GG

Length

18 nucleotides

Bulged bases

1YJ9|1|0|G|1378, 1YJ9|1|0|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YJ9_003 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.0375

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75426.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1YJ9|1|0|C|1374
1YJ9|1|0|A|1375
1YJ9|1|0|G|1376
1YJ9|1|0|C|1377
1YJ9|1|0|G|1378
1YJ9|1|0|A|1379
1YJ9|1|0|U|1380
1YJ9|1|0|A|1381
1YJ9|1|0|G|1382
*
1YJ9|1|0|C|1400
1YJ9|1|0|G|1401
*
1YJ9|1|0|C|1721
1YJ9|1|0|U|1722
1YJ9|1|0|G|1723
1YJ9|1|0|U|1724
1YJ9|1|0|C|1725
*
1YJ9|1|0|G|2050
1YJ9|1|0|G|2051

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19E

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e