J4_1YJN_008

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1YJN|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YJN_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0416

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1YJN|1|0|C|1889
1YJN|1|0|U|1890
1YJN|1|0|G|1891
*
1YJN|1|0|C|1946
1YJN|1|0|G|1947
*
1YJN|1|0|C|1965
1YJN|1|0|U|1966
1YJN|1|0|U|1967
1YJN|1|0|A|1968
1YJN|1|0|A|1969
1YJN|1|0|G|1970
1YJN|1|0|G|1971
1YJN|1|0|U|1972
1YJN|1|0|A|1973
1YJN|1|0|G|1974
*
1YJN|1|0|U|2008
1YJN|1|0|G|2009
1YJN|1|0|A|2010
1YJN|1|0|A|2011
1YJN|1|0|U|2012
1YJN|1|0|G|2013

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P