J4_1Z58_001

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

1Z58|1|2|G|1284, 1Z58|1|2|A|1285, 1Z58|1|2|U|1286, 1Z58|1|2|A|1288, 1Z58|1|2|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Z58_001 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.2858

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

1Z58|1|2|C|1283
1Z58|1|2|G|1284
1Z58|1|2|A|1285
1Z58|1|2|U|1286
1Z58|1|2|A|1287
1Z58|1|2|A|1288
1Z58|1|2|A|1289
*
1Z58|1|2|U|1307
1Z58|1|2|C|1308
*
1Z58|1|2|G|1662
1Z58|1|2|C|1663
1Z58|1|2|G|1664
1Z58|1|2|C|1665
*
1Z58|1|2|G|1992
1Z58|1|2|G|1993

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains