J4_23WI_009

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

23WI|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_23WI_009 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.3039

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

23WI|1|A|C|268
23WI|1|A|C|269
*
23WI|1|A|G|370
23WI|1|A|A|371
23WI|1|A|G|372
23WI|1|A|U|373
23WI|1|A|A|374
23WI|1|A|G|375
*
23WI|1|A|U|399
23WI|1|A|G|400
23WI|1|A|A|401
23WI|1|A|A|402
23WI|1|A|U|403
23WI|1|A|A|404
23WI|1|A|U|405
23WI|1|A|G|406
*
23WI|1|A|C|421
23WI|1|A|A|422
23WI|1|A|A|423
23WI|1|A|G|424

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

50S ribosomal protein L28