J4_23WI_011

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

23WI|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_23WI_011 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5968

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

23WI|1|a|G|115
23WI|1|a|A|116
23WI|1|a|G|117
23WI|1|a|U|118
23WI|1|a|A|119
23WI|1|a|A|120
23WI|1|a|U|121
23WI|1|a|G|122
*
23WI|1|a|U|239
23WI|1|a|G|240
*
23WI|1|a|C|286
23WI|1|a|U|287
23WI|1|a|A|288
23WI|1|a|G|289
*
23WI|1|a|C|311
23WI|1|a|C|312

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

Small ribosomal subunit protein uS17