J4_28LN_001

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG

Length

19 nucleotides

Bulged bases

28LN|1|A2|G|407

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|C|98
28LN|1|A2|A2M|99
28LN|1|A2|U|100
28LN|1|A2|U|101
28LN|1|A2|A|102
28LN|1|A2|A|103
28LN|1|A2|A|104
28LN|1|A2|PSU|105
28LN|1|A2|C|106
*
28LN|1|A2|G|355
28LN|1|A2|C|356
28LN|1|A2|C|357
*
28LN|1|A2|G|405
28LN|1|A2|PSU|406
28LN|1|A2|G|407
28LN|1|A2|A|408
28LN|1|A2|C|409
*
28LN|1|A2|G|431
28LN|1|A2|G|432

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4, X isoform

Chain AI

40S ribosomal protein S8

Chain AL

Small ribosomal subunit protein uS17

Chain AX

Small ribosomal subunit protein uS12