J4_28LN_002
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 28LN|1|A2|A|672, 28LN|1|A2|A|1083, 28LN|1|A2|C|1085, 28LN|1|A2|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|A2|A|671
28LN|1|A2|A|672
28LN|1|A2|G|673
*
28LN|1|A2|C|1032
28LN|1|A2|G|1033
28LN|1|A2|A|1034
28LN|1|A2|A|1035
28LN|1|A2|A|1036
28LN|1|A2|G|1037
*
28LN|1|A2|C|1078
28LN|1|A2|C|1079
28LN|1|A2|A|1080
28LN|1|A2|PSU|1081
28LN|1|A2|A|1082
28LN|1|A2|A|1083
28LN|1|A2|A|1084
28LN|1|A2|C|1085
28LN|1|A2|G|1086
28LN|1|A2|A|1087
28LN|1|A2|U|1088
28LN|1|A2|G|1089
*
28LN|1|A2|U|1160
28LN|1|A2|U|1161
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AN
- 40S ribosomal protein S13
- Chain AO
- 40S ribosomal protein S14
- Chain AW
- 40S ribosomal protein S15a
- Chain AX
- Small ribosomal subunit protein uS12
- Chain Aa
- 40S ribosomal protein S26
- Chain Ah
- 60S ribosomal protein L41
- Chain Bp
- 60S ribosomal protein L37a
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