J4_28LN_007
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (OMC)AAAUAU*AGG*(OMC)AUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 28LN|1|B5|A|2365, 28LN|1|B5|U|2368, 28LN|1|B5|U|2827
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|OMC|2364
28LN|1|B5|A|2365
28LN|1|B5|A|2366
28LN|1|B5|A|2367
28LN|1|B5|U|2368
28LN|1|B5|A|2369
28LN|1|B5|U|2370
*
28LN|1|B5|A|2388
28LN|1|B5|G|2389
28LN|1|B5|G|2390
*
28LN|1|B5|OMC|2823
28LN|1|B5|A|2824
28LN|1|B5|U|2825
28LN|1|B5|G|2826
28LN|1|B5|U|2827
28LN|1|B5|U|2828
*
28LN|1|B5|A|3855
28LN|1|B5|G|3856
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BP
- 60S ribosomal protein L17
- Chain BR
- 60S ribosomal protein L19
- Chain Bd
- 60S ribosomal protein L31
- Chain Bv
- Transcription factor BTF3
Coloring options: