J4_28LN_011

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|G|3633
28LN|1|B5|A|3634
28LN|1|B5|C|3635
28LN|1|B5|PSU|3636
28LN|1|B5|G|3637
*
28LN|1|B5|C|3649
28LN|1|B5|A|3650
28LN|1|B5|A|3651
28LN|1|B5|A|3652
28LN|1|B5|G|3653
*
28LN|1|B5|U|3689
28LN|1|B5|G|3690
28LN|1|B5|A|3691
28LN|1|B5|U|3692
28LN|1|B5|U|3693
*
28LN|1|B5|A|3820
28LN|1|B5|PSU|3821
28LN|1|B5|G|3822
28LN|1|B5|A|3823
28LN|1|B5|A2M|3824
28LN|1|B5|C|3825

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Ah

60S ribosomal protein L41

Chain BA

Large ribosomal subunit protein uL2

Chain Bp

60S ribosomal protein L37a