J4_28LN_012

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

28LN|1|B5|UY1|3817

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|3695
28LN|1|B5|U|3696
28LN|1|B5|G|3697
*
28LN|1|B5|C|3751
28LN|1|B5|G|3752
*
28LN|1|B5|C|3770
28LN|1|B5|U|3771
28LN|1|B5|U|3772
28LN|1|B5|A|3773
28LN|1|B5|A|3774
28LN|1|B5|G|3775
28LN|1|B5|G|3776
28LN|1|B5|U|3777
28LN|1|B5|A|3778
28LN|1|B5|G|3779
*
28LN|1|B5|U|3813
28LN|1|B5|G|3814
28LN|1|B5|A|3815
28LN|1|B5|A|3816
28LN|1|B5|UY1|3817
28LN|1|B5|G|3818

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Ah

60S ribosomal protein L41

Chain B2

Transfer RNA; tRNA

Chain BA

Large ribosomal subunit protein uL2