J4_28LN_014

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAG*UUGA(PSU)*ACC*GGG

Length

16 nucleotides

Bulged bases

28LN|1|B5|A|4233

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_28LN_014 not in the Motif Atlas

Homologous match to J4_9H3G_010

Geometric discrepancy: 0.1709

The information below is about J4_9H3G_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.4

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

28LN|1|B5|C|4230
28LN|1|B5|U|4231
28LN|1|B5|A|4232
28LN|1|B5|A|4233
28LN|1|B5|G|4234
*
28LN|1|B5|U|4288
28LN|1|B5|U|4289
28LN|1|B5|G|4290
28LN|1|B5|A|4291
28LN|1|B5|PSU|4292
*
28LN|1|B5|A|4316
28LN|1|B5|C|4317
28LN|1|B5|C|4318
*
28LN|1|B5|G|4327
28LN|1|B5|G|4328
28LN|1|B5|G|4329

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

60S ribosomal protein L5

Chain BT

60S ribosomal protein L21

Chain Bb

Large ribosomal subunit protein eL29

Chain Bo

Large ribosomal subunit protein eL42