J4_28LN_015

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

28LN|1|B5|A|4588, 28LN|1|B5|U|4676

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|G|4586
28LN|1|B5|U|4587
28LN|1|B5|A|4588
28LN|1|B5|A2M|4589
*
28LN|1|B5|OMU|4619
28LN|1|B5|C|4620
*
28LN|1|B5|G|4675
28LN|1|B5|U|4676
28LN|1|B5|G|4677
*
28LN|1|B5|C|4711
28LN|1|B5|G|4712
28LN|1|B5|C|4713
28LN|1|B5|C|4714

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BO

60S ribosomal protein L13a

Chain BV

60S ribosomal protein L23