J4_28ZX_002
3D structure
- PDB id
- 28ZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (Kozak_1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(A2M)(PSU)UAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 28ZX|1|S2|G|407
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_28ZX_002 not in the Motif Atlas
- Homologous match to J4_9H3G_013
- Geometric discrepancy: 0.0962
- The information below is about J4_9H3G_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.5
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
28ZX|1|S2|C|98
28ZX|1|S2|A2M|99
28ZX|1|S2|PSU|100
28ZX|1|S2|U|101
28ZX|1|S2|A|102
28ZX|1|S2|A|103
28ZX|1|S2|A|104
28ZX|1|S2|PSU|105
28ZX|1|S2|C|106
*
28ZX|1|S2|G|355
28ZX|1|S2|C|356
28ZX|1|S2|C|357
*
28ZX|1|S2|G|405
28ZX|1|S2|PSU|406
28ZX|1|S2|G|407
28ZX|1|S2|A|408
28ZX|1|S2|C|409
*
28ZX|1|S2|G|431
28ZX|1|S2|G|432
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SX
- 40S ribosomal protein S23
Coloring options: