J4_2AAR_001

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2AAR_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1008

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

2AAR|1|0|C|308
2AAR|1|0|G|309
2AAR|1|0|A|310
2AAR|1|0|A|311
2AAR|1|0|G|312
*
2AAR|1|0|C|327
2AAR|1|0|A|328
2AAR|1|0|C|329
2AAR|1|0|C|330
*
2AAR|1|0|G|334
2AAR|1|0|A|335
2AAR|1|0|A|336
*
2AAR|1|0|U|348
2AAR|1|0|G|349
2AAR|1|0|U|350
2AAR|1|0|A|351
2AAR|1|0|G|352

Current chains

Chain 0

23S ribosomal RNA

Nearby chains