J4_2AAR_003

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

2AAR|1|0|G|1284, 2AAR|1|0|A|1285, 2AAR|1|0|U|1286, 2AAR|1|0|A|1287, 2AAR|1|0|A|1288, 2AAR|1|0|C|1663, 2AAR|1|0|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2AAR_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1647

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

2AAR|1|0|C|1283
2AAR|1|0|G|1284
2AAR|1|0|A|1285
2AAR|1|0|U|1286
2AAR|1|0|A|1287
2AAR|1|0|A|1288
2AAR|1|0|A|1289
*
2AAR|1|0|U|1307
2AAR|1|0|C|1308
*
2AAR|1|0|G|1662
2AAR|1|0|C|1663
2AAR|1|0|G|1664
2AAR|1|0|C|1665
*
2AAR|1|0|G|1992
2AAR|1|0|G|1993

Current chains

Chain 0

23S ribosomal RNA

Nearby chains