J4_2AAR_010

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2AAR_010 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1024

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2AAR|1|0|G|2622
2AAR|1|0|A|2623
2AAR|1|0|G|2624
2AAR|1|0|U|2625
*
2AAR|1|0|A|2653
2AAR|1|0|A|2654
2AAR|1|0|C|2655
*
2AAR|1|0|G|2711
2AAR|1|0|G|2712
2AAR|1|0|A|2713
2AAR|1|0|A|2714
2AAR|1|0|C|2715
2AAR|1|0|G|2716
*
2AAR|1|0|C|2748
2AAR|1|0|A|2749
2AAR|1|0|G|2750
2AAR|1|0|C|2751

Current chains

Chain 0

23S ribosomal RNA

Nearby chains