J4_2D3O_012

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

2D3O|1|0|A|2265, 2D3O|1|0|A|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2D3O_012 not in the Motif Atlas

Homologous match to J4_7A0S_009

Geometric discrepancy: 0.3743

The information below is about J4_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

2D3O|1|0|C|2264
2D3O|1|0|A|2265
2D3O|1|0|A|2266
2D3O|1|0|A|2267
2D3O|1|0|G|2268
*
2D3O|1|0|U|2322
2D3O|1|0|U|2323
2D3O|1|0|G|2324
2D3O|1|0|A|2325
2D3O|1|0|C|2326
*
2D3O|1|0|G|2349
2D3O|1|0|G|2350
2D3O|1|0|G|2351
*
2D3O|1|0|C|2360
2D3O|1|0|G|2361
2D3O|1|0|G|2362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains