J4_2D6F_002

3D structure

PDB id

2D6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUGG*UG*CGACA*UC

Length

13 nucleotides

Bulged bases

2D6F|1|F|U|908, 2D6F|1|F|C|948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_72305.5

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

2D6F|1|F|G|907
2D6F|1|F|U|908
2D6F|1|F|G|909
2D6F|1|F|G|910
*
2D6F|1|F|U|925
2D6F|1|F|G|926
*
2D6F|1|F|C|944
2D6F|1|F|G|945
2D6F|1|F|A|947
2D6F|1|F|C|948
2D6F|1|F|A|949
*
2D6F|1|F|U|965
2D6F|1|F|C|966

Current chains

Chain F

tRNA

Nearby chains

Chain D

Glutamyl-tRNA(Gln) amidotransferase subunit E