J4_2E5L_002

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

2E5L|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2E5L_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1164

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

2E5L|1|A|G|142
2E5L|1|A|A|143
2E5L|1|A|G|144
*
2E5L|1|A|C|178
2E5L|1|A|A|179
2E5L|1|A|U|180
2E5L|1|A|G|181
2E5L|1|A|U|182
2E5L|1|A|G|183
*
2E5L|1|A|C|194
2E5L|1|A|A|195
2E5L|1|A|A|196
2E5L|1|A|A|197
2E5L|1|A|G|198
*
2E5L|1|A|C|219
2E5L|1|A|G|220
2E5L|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20