J4_2F4V_002

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2F4V_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0893

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

2F4V|1|A|G|142
2F4V|1|A|A|143
2F4V|1|A|G|144
*
2F4V|1|A|C|178
2F4V|1|A|A|179
2F4V|1|A|U|180
2F4V|1|A|G|181
2F4V|1|A|U|182
2F4V|1|A|G|183
*
2F4V|1|A|C|194
2F4V|1|A|A|195
2F4V|1|A|A|196
2F4V|1|A|A|197
2F4V|1|A|G|198
*
2F4V|1|A|C|219
2F4V|1|A|G|220
2F4V|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20