J4_2J28_001

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

2J28|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2J28_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2591

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|C|268
2J28|1|B|C|269
*
2J28|1|B|G|370
2J28|1|B|A|371
2J28|1|B|G|372
2J28|1|B|U|373
2J28|1|B|A|374
2J28|1|B|G|375
*
2J28|1|B|U|399
2J28|1|B|G|400
2J28|1|B|A|401
2J28|1|B|A|402
2J28|1|B|U|403
2J28|1|B|A|404
2J28|1|B|U|405
2J28|1|B|G|406
*
2J28|1|B|C|421
2J28|1|B|A|422
2J28|1|B|A|423
2J28|1|B|G|424

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L9

Chain Z

50S RIBOSOMAL PROTEIN L31