J4_2J28_004

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

2J28|1|B|G|1271, 2J28|1|B|A|1272, 2J28|1|B|U|1273, 2J28|1|B|A|1274, 2J28|1|B|A|1275, 2J28|1|B|C|1646, 2J28|1|B|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2J28_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1627

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

2J28|1|B|C|1270
2J28|1|B|G|1271
2J28|1|B|A|1272
2J28|1|B|U|1273
2J28|1|B|A|1274
2J28|1|B|A|1275
2J28|1|B|A|1276
*
2J28|1|B|U|1294
2J28|1|B|C|1295
*
2J28|1|B|G|1645
2J28|1|B|C|1646
2J28|1|B|U|1647
2J28|1|B|U|1648
*
2J28|1|B|A|2009
2J28|1|B|G|2010

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain N

50S RIBOSOMAL PROTEIN L17

Chain S

50S RIBOSOMAL PROTEIN L22