J4_2J28_006
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 2J28|1|B|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2J28_006 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0882
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
2J28|1|B|U|1313
2J28|1|B|C|1314
*
2J28|1|B|G|1338
2J28|1|B|G|1339
2J28|1|B|U|1340
2J28|1|B|G|1341
2J28|1|B|A|1342
2J28|1|B|G|1343
*
2J28|1|B|C|1404
2J28|1|B|U|1405
*
2J28|1|B|A|1597
2J28|1|B|A|1598
2J28|1|B|U|1599
2J28|1|B|C|1600
2J28|1|B|G|1601
2J28|1|B|U|1602
2J28|1|B|A|1603
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain T
- 50S RIBOSOMAL PROTEIN L23
- Chain X
- 50S RIBOSOMAL PROTEIN L29
Coloring options: