3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
UC*GGUGAG*CU*AAUCGUA
Length
17 nucleotides
Bulged bases
2J28|1|B|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_2J28_006 not in the Motif Atlas
Homologous match to J4_5J7L_023
Geometric discrepancy: 0.0882
The information below is about J4_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_10313.5
Basepair signature
cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

2J28|1|B|U|1313
2J28|1|B|C|1314
*
2J28|1|B|G|1338
2J28|1|B|G|1339
2J28|1|B|U|1340
2J28|1|B|G|1341
2J28|1|B|A|1342
2J28|1|B|G|1343
*
2J28|1|B|C|1404
2J28|1|B|U|1405
*
2J28|1|B|A|1597
2J28|1|B|A|1598
2J28|1|B|U|1599
2J28|1|B|C|1600
2J28|1|B|G|1601
2J28|1|B|U|1602
2J28|1|B|A|1603

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain T
50S RIBOSOMAL PROTEIN L23
Chain X
50S RIBOSOMAL PROTEIN L29

Coloring options:


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