J4_2J28_011

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2J28_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1374

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

2J28|1|B|G|2643
2J28|1|B|G|2644
2J28|1|B|G|2645
2J28|1|B|C|2646
*
2J28|1|B|G|2674
2J28|1|B|A|2675
2J28|1|B|C|2676
*
2J28|1|B|G|2731
2J28|1|B|G|2732
2J28|1|B|A|2733
2J28|1|B|A|2734
2J28|1|B|G|2735
*
2J28|1|B|U|2769
2J28|1|B|G|2770
2J28|1|B|C|2771

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain J

50S RIBOSOMAL PROTEIN L13

Chain K

50S RIBOSOMAL PROTEIN L14