J4_2O44_005

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2O44_005 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.098

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2O44|1|A|G|1763
2O44|1|A|A|1764
2O44|1|A|C|1765
2O44|1|A|U|1766
2O44|1|A|G|1767
*
2O44|1|A|C|1779
2O44|1|A|A|1780
2O44|1|A|C|1781
2O44|1|A|A|1782
2O44|1|A|G|1783
*
2O44|1|A|U|1819
2O44|1|A|G|1820
2O44|1|A|A|1821
2O44|1|A|C|1822
*
2O44|1|A|G|1958
2O44|1|A|U|1959
2O44|1|A|A|1960
2O44|1|A|A|1961
2O44|1|A|C|1962

Current chains

Chain A

23S rRNA

Nearby chains