J4_2OGO_005

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OGO_005 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0963

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|G|1763
2OGO|1|0|A|1764
2OGO|1|0|C|1765
2OGO|1|0|U|1766
2OGO|1|0|G|1767
*
2OGO|1|0|C|1779
2OGO|1|0|A|1780
2OGO|1|0|C|1781
2OGO|1|0|A|1782
2OGO|1|0|G|1783
*
2OGO|1|0|U|1819
2OGO|1|0|G|1820
2OGO|1|0|A|1821
2OGO|1|0|C|1822
*
2OGO|1|0|G|1958
2OGO|1|0|U|1959
2OGO|1|0|A|1960
2OGO|1|0|A|1961
2OGO|1|0|C|1962

Current chains

Chain 0

23S ribosomal RNA

Nearby chains