J4_2OGO_008

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OGO_008 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1071

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2OGO|1|0|G|2622
2OGO|1|0|A|2623
2OGO|1|0|G|2624
2OGO|1|0|U|2625
*
2OGO|1|0|A|2653
2OGO|1|0|A|2654
2OGO|1|0|C|2655
*
2OGO|1|0|G|2711
2OGO|1|0|G|2712
2OGO|1|0|A|2713
2OGO|1|0|A|2714
2OGO|1|0|C|2715
2OGO|1|0|G|2716
*
2OGO|1|0|C|2748
2OGO|1|0|A|2749
2OGO|1|0|G|2750
2OGO|1|0|C|2751

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3