J4_2OGO_009

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OGO_009 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1145

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

2OGO|1|0|C|308
2OGO|1|0|G|309
2OGO|1|0|A|310
2OGO|1|0|A|311
2OGO|1|0|G|312
*
2OGO|1|0|C|327
2OGO|1|0|A|328
2OGO|1|0|C|329
2OGO|1|0|C|330
*
2OGO|1|0|G|334
2OGO|1|0|A|335
2OGO|1|0|A|336
*
2OGO|1|0|U|348
2OGO|1|0|G|349
2OGO|1|0|U|350
2OGO|1|0|A|351
2OGO|1|0|G|352

Current chains

Chain 0

23S ribosomal RNA

Nearby chains