J4_2OTJ_007

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OTJ_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0298

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

2OTJ|1|0|G|1828
2OTJ|1|0|A|1829
2OTJ|1|0|C|1830
2OTJ|1|0|U|1831
2OTJ|1|0|G|1832
*
2OTJ|1|0|C|1844
2OTJ|1|0|A|1845
2OTJ|1|0|U|1846
2OTJ|1|0|A|1847
2OTJ|1|0|G|1848
*
2OTJ|1|0|U|1883
2OTJ|1|0|G|1884
2OTJ|1|0|A|1885
2OTJ|1|0|A|1886
2OTJ|1|0|U|1887
*
2OTJ|1|0|A|2015
2OTJ|1|0|U|2016
2OTJ|1|0|U|2017
2OTJ|1|0|A|2018
2OTJ|1|0|A|2019
2OTJ|1|0|C|2020

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae