J4_2OTL_004
3D structure
- PDB id
- 2OTL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Girodazole bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GUCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 2OTL|1|0|U|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2OTL_004 not in the Motif Atlas
- Homologous match to J4_4V9F_004
- Geometric discrepancy: 0.0314
- The information below is about J4_4V9F_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.1
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
2OTL|1|0|G|1416
2OTL|1|0|G|1417
2OTL|1|0|U|1418
2OTL|1|0|U|1419
2OTL|1|0|C|1420
*
2OTL|1|0|G|1444
2OTL|1|0|G|1445
2OTL|1|0|U|1446
2OTL|1|0|U|1447
2OTL|1|0|A|1448
2OTL|1|0|G|1449
*
2OTL|1|0|C|1513
2OTL|1|0|C|1514
*
2OTL|1|0|G|1672
2OTL|1|0|U|1673
2OTL|1|0|C|1674
2OTL|1|0|C|1675
2OTL|1|0|G|1676
2OTL|1|0|U|1677
2OTL|1|0|A|1678
2OTL|1|0|C|1679
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain P
- 50S ribosomal protein L19e
- Chain S
- 50S ribosomal protein L23P
- Chain V
- 50S ribosomal protein L29P
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