J4_2OTL_009

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

2OTL|1|0|U|2322, 2OTL|1|0|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OTL_009 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.053

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

2OTL|1|0|C|2319
2OTL|1|0|U|2320
2OTL|1|0|A|2321
2OTL|1|0|U|2322
2OTL|1|0|G|2323
*
2OTL|1|0|U|2377
2OTL|1|0|U|2378
2OTL|1|0|G|2379
2OTL|1|0|A|2380
2OTL|1|0|C|2381
*
2OTL|1|0|G|2407
2OTL|1|0|A|2408
2OTL|1|0|C|2409
*
2OTL|1|0|G|2418
2OTL|1|0|U|2419
2OTL|1|0|G|2420

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e