J4_2QA4_006

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2QA4_006 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0875

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

2QA4|1|0|G|1828
2QA4|1|0|A|1829
2QA4|1|0|C|1830
2QA4|1|0|U|1831
2QA4|1|0|G|1832
*
2QA4|1|0|C|1844
2QA4|1|0|A|1845
2QA4|1|0|U|1846
2QA4|1|0|A|1847
2QA4|1|0|G|1848
*
2QA4|1|0|U|1883
2QA4|1|0|G|1884
2QA4|1|0|A|1885
2QA4|1|0|A|1886
2QA4|1|0|U|1887
*
2QA4|1|0|A|2015
2QA4|1|0|U|2016
2QA4|1|0|U|2017
2QA4|1|0|A|2018
2QA4|1|0|A|2019
2QA4|1|0|C|2020

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae