J4_2QEX_009

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

2QEX|1|0|U|2322, 2QEX|1|0|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2QEX_009 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0536

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

2QEX|1|0|C|2319
2QEX|1|0|U|2320
2QEX|1|0|A|2321
2QEX|1|0|U|2322
2QEX|1|0|G|2323
*
2QEX|1|0|U|2377
2QEX|1|0|U|2378
2QEX|1|0|G|2379
2QEX|1|0|A|2380
2QEX|1|0|C|2381
*
2QEX|1|0|G|2407
2QEX|1|0|A|2408
2QEX|1|0|C|2409
*
2QEX|1|0|G|2418
2QEX|1|0|U|2419
2QEX|1|0|G|2420

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44e

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e