J4_2UUB_002

3D structure

PDB id

2UUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2UUB_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0556

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

2UUB|1|A|G|142
2UUB|1|A|A|143
2UUB|1|A|G|144
*
2UUB|1|A|C|178
2UUB|1|A|A|179
2UUB|1|A|U|180
2UUB|1|A|G|181
2UUB|1|A|U|182
2UUB|1|A|G|183
*
2UUB|1|A|C|194
2UUB|1|A|A|195
2UUB|1|A|A|196
2UUB|1|A|A|197
2UUB|1|A|G|198
*
2UUB|1|A|C|219
2UUB|1|A|G|220
2UUB|1|A|C|221

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20