J4_2UUC_002

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2UUC_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0574

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

2UUC|1|A|G|142
2UUC|1|A|A|143
2UUC|1|A|G|144
*
2UUC|1|A|C|178
2UUC|1|A|A|179
2UUC|1|A|U|180
2UUC|1|A|G|181
2UUC|1|A|U|182
2UUC|1|A|G|183
*
2UUC|1|A|C|194
2UUC|1|A|A|195
2UUC|1|A|A|196
2UUC|1|A|A|197
2UUC|1|A|G|198
*
2UUC|1|A|C|219
2UUC|1|A|G|220
2UUC|1|A|C|221

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20