3D structure

PDB id
2UXD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_2UXD_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.0866
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

2UXD|1|A|G|142
2UXD|1|A|A|143
2UXD|1|A|G|144
*
2UXD|1|A|C|178
2UXD|1|A|A|179
2UXD|1|A|U|180
2UXD|1|A|G|181
2UXD|1|A|U|182
2UXD|1|A|G|183
*
2UXD|1|A|C|194
2UXD|1|A|A|195
2UXD|1|A|A|196
2UXD|1|A|A|197
2UXD|1|A|G|198
*
2UXD|1|A|C|219
2UXD|1|A|G|220
2UXD|1|A|C|221

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
RIBOSOMAL PROTEIN S7
Chain T
RIBOSOMAL PROTEIN S20

Coloring options:


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