J4_2VQF_002
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2VQF_002 not in the Motif Atlas
- Homologous match to J4_4LFB_002
- Geometric discrepancy: 0.0455
- The information below is about J4_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_88771.1
- Basepair signature
- cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
- Number of instances in this motif group
- 1
Unit IDs
2VQF|1|A|G|142
2VQF|1|A|A|143
2VQF|1|A|G|144
*
2VQF|1|A|C|178
2VQF|1|A|A|179
2VQF|1|A|U|180
2VQF|1|A|G|181
2VQF|1|A|U|182
2VQF|1|A|G|183
*
2VQF|1|A|C|194
2VQF|1|A|A|195
2VQF|1|A|A|196
2VQF|1|A|A|197
2VQF|1|A|G|198
*
2VQF|1|A|C|219
2VQF|1|A|G|220
2VQF|1|A|C|221
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: