J4_2YKR_002

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2YKR_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.4262

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

2YKR|1|A|G|142
2YKR|1|A|A|143
2YKR|1|A|G|144
*
2YKR|1|A|C|178
2YKR|1|A|A|179
2YKR|1|A|U|180
2YKR|1|A|A|181
2YKR|1|A|A|182
2YKR|1|A|C|183
2YKR|1|A|G|184
*
2YKR|1|A|C|193
2YKR|1|A|C|194
2YKR|1|A|A|195
2YKR|1|A|A|196
2YKR|1|A|A|197
2YKR|1|A|G|198
*
2YKR|1|A|U|219
2YKR|1|A|G|220
2YKR|1|A|C|221

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20