J4_2ZJP_008

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

2ZJP|1|X|A|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJP_008 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.5807

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

2ZJP|1|X|C|2264
2ZJP|1|X|A|2265
2ZJP|1|X|A|2266
2ZJP|1|X|A|2267
2ZJP|1|X|G|2268
2ZJP|1|X|G|2269
*
2ZJP|1|X|C|2321
2ZJP|1|X|U|2322
2ZJP|1|X|U|2323
2ZJP|1|X|G|2324
2ZJP|1|X|A|2325
2ZJP|1|X|C|2326
*
2ZJP|1|X|G|2349
2ZJP|1|X|G|2350
2ZJP|1|X|G|2351
*
2ZJP|1|X|C|2360
2ZJP|1|X|G|2361
2ZJP|1|X|G|2362

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain T

50S RIBOSOMAL PROTEIN L27