J4_2ZJR_008

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

2ZJR|1|X|A|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJR_008 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1856

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

2ZJR|1|X|C|2264
2ZJR|1|X|A|2265
2ZJR|1|X|A|2266
2ZJR|1|X|A|2267
2ZJR|1|X|G|2268
*
2ZJR|1|X|U|2322
2ZJR|1|X|U|2323
2ZJR|1|X|G|2324
2ZJR|1|X|A|2325
2ZJR|1|X|C|2326
*
2ZJR|1|X|G|2349
2ZJR|1|X|G|2350
2ZJR|1|X|G|2351
*
2ZJR|1|X|C|2360
2ZJR|1|X|G|2361
2ZJR|1|X|G|2362

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27