J4_2ZM5_002

3D structure

PDB id

2ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

2ZM5|1|D|U|8, 2ZM5|1|D|U|45, 2ZM5|1|D|U|47, 2ZM5|1|D|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZM5_002 not in the Motif Atlas

Homologous match to J4_4YCO_001

Geometric discrepancy: 0.2942

The information below is about J4_4YCO_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

2ZM5|1|D|A|7
2ZM5|1|D|U|8
2ZM5|1|D|A|9
2ZM5|1|D|G|10
*
2ZM5|1|D|C|25
2ZM5|1|D|A|26
2ZM5|1|D|G|27
*
2ZM5|1|D|C|43
2ZM5|1|D|G|44
2ZM5|1|D|U|45
2ZM5|1|D|G|46
2ZM5|1|D|U|47
2ZM5|1|D|C|48
2ZM5|1|D|C|49
*
2ZM5|1|D|G|65
2ZM5|1|D|U|66

Current chains

Chain D

tRNA(Phe)

Nearby chains

Chain A

tRNA delta(2)-isopentenylpyrophosphate transferase

Chain B

tRNA delta(2)-isopentenylpyrophosphate transferase