J4_4YCO_001

3D structure

PDB id

4YCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

4YCO|1|D|U|8, 4YCO|1|D|U|45, 4YCO|1|D|U|47, 4YCO|1|D|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4YCO|1|D|A|7
4YCO|1|D|U|8
4YCO|1|D|A|9
4YCO|1|D|G|10
*
4YCO|1|D|C|25
4YCO|1|D|A|26
4YCO|1|D|G|27
*
4YCO|1|D|C|43
4YCO|1|D|G|44
4YCO|1|D|U|45
4YCO|1|D|G|46
4YCO|1|D|U|47
4YCO|1|D|C|48
4YCO|1|D|C|49
*
4YCO|1|D|G|65
4YCO|1|D|U|66

Current chains

Chain D

tRNAphe

Nearby chains

Chain A

tRNA-dihydrouridine synthase C

Chain B

tRNA-dihydrouridine synthase C